ABOUT THIS RECORDspecies: Juglans hindsii x Juglans regia
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Juglans hindsii x Juglans regia Juglans Juglandaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATATGGCAGCTTCACC mismatches: 2 bulges: 1 |
pre-miRNA
TACGGCCTGCTTCTCGTGCACCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTCTTCTCGATTAATCAAGGAAAGATCGGATCATATGGCAGCTT
CACCTGTTGATGGAATCACGAAAAACCCAGAA
dot-bracket secondary structure
......(((.((.(((((..(((.((((((.(((((((((((..(((((((...(((((((............)))))))...))))))).)))))))))
)).)))))).)))...))))).))...)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACGGCCTGCTTCTCGTGCACCACTAGCAGTTGAAGCTGCCAGCATGATCTAAACTTTCTTCTCGATTAATCAAGGAAAGATCGGATCATATGGCAGCTT
CACCTGTTGATGGAATCACGAAAAACCCAGAA
dot-bracket secondary structure
......(((.((.(((((..(((.((((((.(((((((((((..(((((((...(((((((............)))))))...))))))).)))))))))
)).)))))).)))...))))).))...)))..
SIMILARITIES| miRBase tcc-MIR167a: 7e-18 PMRD sly-miR167: 3e-17 microPC miR167: 1e-34 | UniProt no hits RFAM MIR167_1: 0.00000000000003 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST045795) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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