miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001292
species: Lactuca perennis
miRNA family: MIR163
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAAGAAGACTTGGAGCTTCA

miRNA*
 AAGCTGCAAATCTCATCATTT

mismatches: 4
bulges: 2
View larger
pre-miRNA
 ATGGAGATTGGGAAGCTGCAAATCTCATCATTTCAAAACGAAAAGTGCTCGTACGATTTAGCATCACTGTTAATGGTGAAACTGCACTTCACATTGCAAC
ATCAGCCCAAAACACCAAGTTTGTTGAAGCTATTGTCGGATTGATGGAAGAAGAAGACTTGGAGCTTCAAAACAAGAG

dot-bracket secondary structure
.......(((.((((((.(((.((((.((.(((((..((.....))..(((..((((.((((.(((((......)))))...((((........))))..
.(((((...((((.....))))))))).))))..))))...)))))))))).).))).))).))))))....)))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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