ABOUT THIS RECORDspecies: Lactuca perennis
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGACACTAAGAACCATA mismatches: 2 bulges: 2 |
pre-miRNA
CAACAACAAGCGCATAACTCCATAGGAGTGACACTAAGAACCATATGGTTGAATTGCTATCTCCAGCGTATATTCATATGTTGTGAGCACAAATTTTTGA
TGCACATACAGTTGTTTGTCAGACCTTGTCCACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCCCCTTTTCATTCA
dot-bracket secondary structure
.......(((((.....(((((.(((.(((((.((.(((((((.(((((.((..((((.....((((((((....))))))))..))))(((...(((((
((.(((......))).)))))))..))))).))))).....)).))))).))))))).))).))))).....)))))..............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
CAACAACAAGCGCATAACTCCATAGGAGTGACACTAAGAACCATATGGTTGAATTGCTATCTCCAGCGTATATTCATATGTTGTGAGCACAAATTTTTGA
TGCACATACAGTTGTTTGTCAGACCTTGTCCACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCCCCTTTTCATTCA
dot-bracket secondary structure
.......(((((.....(((((.(((.(((((.((.(((((((.(((((.((..((((.....((((((((....))))))))..))))(((...(((((
((.(((......))).)))))))..))))).))))).....)).))))).))))))).))).))))).....)))))..............
SIMILARITIES| miRBase vvi-MIR398a: 0.00000001 PMRD vvi-miR398a: 0.00000001 microPC miR398: 2e-56 | UniProt no hits RFAM MIR398: 0.0000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
