miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001297
species: Lactuca perennis
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACCATA

mismatches: 2
bulges: 2
View larger
pre-miRNA
 CAACAACAAGCGCATAACTCCATAGGAGTGACACTAAGAACCATATGGTTGAATTGCTATCTCCAGCGTATATTCATATGTTGTGAGCACAAATTTTTGA
TGCACATACAGTTGTTTGTCAGACCTTGTCCACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCCCCTTTTCATTCA

dot-bracket secondary structure
.......(((((.....(((((.(((.(((((.((.(((((((.(((((.((..((((.....((((((((....))))))))..))))(((...(((((
((.(((......))).)))))))..))))).))))).....)).))))).))))))).))).))))).....)))))..............


SIMILARITIES
miRBase vvi-MIR398a: 0.00000001

PMRD vvi-miR398a: 0.00000001

microPC miR398: 2e-56		UniProt no hits

RFAM MIR398: 0.0000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;