ABOUT THIS RECORDspecies: Lactuca saligna
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* CGGCATCTTCAAGATTCACA mismatches: 2 bulges: 0 |
pre-miRNA
CTCTTAAACCACGAAAGTCATTGATTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTCAATGGGTAATGAGA
ATCTTGATGATGCTGCATCAGAAATCAATCGACTACATTCCATTTAC
dot-bracket secondary structure
...............(((((((((((.(((((((((((((.(((((((((.((((((.....((((..((.....))...))))......))).))).))
))))))).))))))))))))).))))))).)))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTCTTAAACCACGAAAGTCATTGATTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTCAATGGGTAATGAGA
ATCTTGATGATGCTGCATCAGAAATCAATCGACTACATTCCATTTAC
dot-bracket secondary structure
...............(((((((((((.(((((((((((((.(((((((((.((((((.....((((..((.....))...))))......))).))).))
))))))).))))))))))))).))))))).)))).............
SIMILARITIES| miRBase osa-MIR172d: 0.00000003 PMRD sbi-miR172d: 0.00000003 microPC miR172: 1e-44 | UniProt no hits RFAM mir-172: 0.0000001 | most similar mature miRNAs |
Identical with: miR172 from microPC (MNEST044830) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
