miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001305
species: Lactuca saligna
miRNA family: MIR477
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCTCCCTCAAGGGCTTCTA

miRNA*
 GAGGCTTGCGAGTGAGATCA

mismatches: 4
bulges: 0
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pre-miRNA
 TTTTCCAGGCATTGATTGCTTGCTCTCCCTCAAGGGCTTCTAGCATTGACCCTACATATATGTAATGCCTCTTATTCTTATAATATAAGACTAAGAGCAT
GTGTTTGGAGGTCTTGCTAGAGGCTTGCGAGTGAGATCAGATACTCAATGTCTTGTTG

dot-bracket secondary structure
......(((((((((.((.(((.((((.(((..((((((((((((..(((((((.((((((((......(((((.((((((...)))))).)))))))))
)))).))).)))).))))))))))))..))).)))).))).)).))))))))).....


SIMILARITIES
miRBase vvi-MIR447b: 0.0005

PMRD aqc-miR477g: 0.0005

microPC no hits		UniProt no hits

RFAM MIR473: 0.0006		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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