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Species belonging to selected taxon:

Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa



ABOUT THIS RECORD

ID: MNEST001311
species: Lactuca sativa
miRNA family: MIRf93
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCCAAGTATCTTGGTTTTGCA

miRNA*
 CAGATTCTAAGATGCTTAATGC

mismatches: 4
bulges: 1
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pre-miRNA
 GGAGTGCATGTGCCAAGTATCTTGGTTTTGCAATAGGAGTGCATGAGTTGGACAACAGAACTCCATGAATTCTTTGTGGAAGGAGTCAACCAACTTGGCG
GTAATGAAAGAGCTATACTAAAAGGAGTTTTGAAGCTCATTAATATTGAAAGTTTTACAATTTATCATGTGAAAAGTCATCTGCAGATTCTAAGATGCTT
AATGCATTGTTCA

dot-bracket secondary structure
..(((((((.....(((((((((((.((((((...(((((.......(((.....))).))))).(((.((((((...)))))).)))(((........)
)).((.((.(((((..(((......))).....))))).)).))..(((...(((((((........)))))))..)))..))))))..)))))))))))
.))))))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q941I2|KAN3_ARATH: 0.000000002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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