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Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001317
species: Lactuca sativa
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAGTTGCCCTG

miRNA*
 GGACTACTTTCTATTGGCATA

mismatches: 5
bulges: 0
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pre-miRNA
 TGATCAATCATCAAGCGAAATCAGTTAAAGGACTACTTTCTATTGGCATATTTATTTAAAATATGTAATCCATGATTATTAGTCTTATTATGATATGCCAA
AGGAGAGTTGCCCTGTAACTGTTTATTGCTTATATGTTAT

dot-bracket secondary structure
)...........((((((...((((((.(((...(((((((.((((((((((....(((.((..((((((...))))))..)).)))....))))))))))
.)))))))...))).))))))....)))))).........


SIMILARITIES
miRBase csi-MIR399d: 7.0E-9

PMRD zma-miR399e: 4.0E-7

microPC miR399: 4.0E-44		UniProt no hits

RFAM 9mir-399: 8.0E-6		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046374)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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