ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf168
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTAGCCAAGGATGACTTG miRNA* GTCTTCTTGGCTAACTTGAC mismatches: 2 bulges: 2 |
pre-miRNA
AAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTT
TGTTAGACCGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTTTCATGTTAGATCTCATTTTCT
dot-bracket secondary structure
....(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).))))
))..)))..)))...)))))))))))))))))).))).))))..)).))))).))))))).)).)))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTT
TGTTAGACCGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTTTCATGTTAGATCTCATTTTCT
dot-bracket secondary structure
....(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).))))
))..)))..)))...)))))))))))))))))).))).))))..)).))))).))))))).)).)))).))))).
SIMILARITIES| miRBase ptc-MIR169k: 0.000000002 PMRD ptc-miR169k: 0.000000002 microPC miR169: 4e-48 | UniProt no hits RFAM MIR169_5: 0.00000004 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045794) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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