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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001320
species: Lactuca sativa
miRNA family: MIRf168
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGTAGCCAAGGATGACTTG

miRNA*
 GTCTTCTTGGCTAACTTGAC

mismatches: 2
bulges: 2
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pre-miRNA
 AAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTT
TGTTAGACCGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTTTCATGTTAGATCTCATTTTCT

dot-bracket secondary structure
....(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).))))
))..)))..)))...)))))))))))))))))).))).))))..)).))))).))))))).)).)))).))))).


SIMILARITIES
miRBase ptc-MIR169k: 0.000000002

PMRD ptc-miR169k: 0.000000002

microPC miR169: 4e-48		UniProt no hits

RFAM MIR169_5: 0.00000004		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST045794)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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