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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001321
species: Lactuca sativa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCCAAGGATGACTTGCCTGT

miRNA*
 AGGCAGTCTTCTTGGCTAA

mismatches: 1
bulges: 2
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pre-miRNA
 CAAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTT
TGTTAGACCGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTTTCATGTTAGATCTCATTTTC

dot-bracket secondary structure
)....(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).))))
))..)))..)))...)))))))))))))))))).))).))))..)).))))).))))))).)).)))).)))))


SIMILARITIES
miRBase ptc-MIR169k: 2.0E-9

PMRD ptc-miR169k: 2.0E-9

microPC miR169: 4.0E-48		UniProt no hits

RFAM 5MIR169_5: 4.0E-8		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST045794)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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