miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001324
species: Lactuca sativa
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGACAGAAGAGAGTGAGCAC

miRNA*
 GCTCACCCTCTGTCTGTCACCC

mismatches: 1
bulges: 1
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pre-miRNA
 AAGGGTGGTGGTGACAGAAGAGAGTGAGCACCCATGGTCTTTCTCGCAAATAGTGCGCTTTCATGTGCTTGAAGCTATGCGTGCTCACCCTCTGTCTGTC
ACCCCTGCTAT

dot-bracket secondary structure
...(((((.(((((((((((((.((((((((.((((((..(((..(((....(((......))).)))..))))))))).)))))))).)))).))))))
))).)))))..


SIMILARITIES
miRBase aly-MIR156f: 0.000000001

PMRD ptc-miRf10647-akr: 0.000000006

microPC miR156: 2e-45		UniProt no hits

RFAM mir-156: 0.000002		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST046706)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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