miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001325
species: Lactuca sativa
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTGCTCTATCTGTCACC

mismatches: 1
bulges: 2
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pre-miRNA
 TTGTGGGGAGAGAAATAGGGCTGACAGAAGAGAGTGAGCACACAAAGGCTAATTGTACCGAAGTTACTTGTATGATTGTTTTGGGTGCTCACTGCTCTAT
CTGTCACCTTCATTCTTTTGCTTCTC

dot-bracket secondary structure
....((.(((((((..((((.((((((((((((((((((((...(((((.((((((((...........)))))))))))))..))))))))).)))).)
))))))))))..))))))).))....


SIMILARITIES
miRBase ath-MIR156c: 0.000000002

PMRD ath-miR156c: 0.000000002

microPC miR156: 6e-43		UniProt no hits

RFAM mir-156: 0.00000003		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST046574)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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