ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf137
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGAATCTTGATGATGCTGCAT miRNA* GTGGCATCATCAAGATTCACGTA mismatches: 2 bulges: 0 |
pre-miRNA
GCTAAAGTCGTTGTTTTCCGGCGTGGCATCATCAAGATTCACGTACAAAAGCAAAAAGCAAAAGCTTTTTGAGGATGAGAATCTTGATGATGCTGCATCGG
CAATAAATGGCTGTG
dot-bracket secondary structure
)....(((((((..((.((((.((((((((((((((((((.(((.......((((((((....))))))))...))).)))))))))))))))))).))))
.))..)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTAAAGTCGTTGTTTTCCGGCGTGGCATCATCAAGATTCACGTACAAAAGCAAAAAGCAAAAGCTTTTTGAGGATGAGAATCTTGATGATGCTGCATCGG
CAATAAATGGCTGTG
dot-bracket secondary structure
)....(((((((..((.((((.((((((((((((((((((.(((.......((((((((....))))))))...))).)))))))))))))))))).))))
.))..)))))))...
SIMILARITIES| miRBase vvi-MIR172a: 4.0E-13 PMRD vvi-miR172a: 4.0E-13 microPC miR172: 1.0E-6 | UniProt no hits RFAM 2mir-172: 4.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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