miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001327
species: Lactuca sativa
miRNA family: MIRf1481
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATGCTGCATCGGCAATAAA

miRNA*
 GTTTTCCGGCGTGGCATCATC

mismatches: 4
bulges: 0
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pre-miRNA
 CTAAAGTCGTTGTTTTCCGGCGTGGCATCATCAAGATTCACGTACAAAAGCAAAAAGCAAAAGCTTTTTGAGGATGAGAATCTTGATGATGCTGCATCGG
CAATAAATGGCTGTG

dot-bracket secondary structure
....(((((((..((.((((.((((((((((((((((((.(((.......((((((((....))))))))...))).)))))))))))))))))).))))
.))..)))))))...


SIMILARITIES
miRBase vvi-MIR172a: 0.0000000000004

PMRD vvi-miR172a: 0.0000000000004

microPC miR172: 0.000001		UniProt no hits

RFAM mir-172: 0.0000000000004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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