miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001330
species: Lactuca sativa
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCTGTTCAATAAAGCTGTGG

miRNA*
 ACAGCTTTCTTGAACTGCATG

mismatches: 2
bulges: 0
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pre-miRNA
 GAATGGTGCTCTTTCTGTTCTTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGAAGATAG
AGAGAGGATCAAC

dot-bracket secondary structure
...((((.(((((((((((.((((((((((((.((((((.(((.(((((...............)))))..))).)))))).)))))))))))).)))))
)))))).))))..


SIMILARITIES
miRBase lja-MIR396: 0.000000006

PMRD lja-miR396: 0.000000006

microPC miR396: 2e-36		UniProt no hits

RFAM MIR396: 0.0000001		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST046137)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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