miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001334
species: Lactuca sativa
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCCTCATCATCATCATGT

miRNA*
 GTGGTGGAGGTGAGGATTTGA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GTGGTGGTGGGCGTGGTGGAGGTGAGGATTTGAAATGTTATGAGTGCGGTGAGCCTGGTCATTTTGCAAGAGAATGTCGCCTGAGAGTTGGGGGTCGAGG
TGGAAGGCGTCGTAGCCCTATTCCAAGGCGACGTAGGAGTCCAAGCTATGGAAGGAGGAGTTATAGTCCTCGTGGAAGAAGATCTCCGCCACCTCGTTAT
AGCATATCACCTCGCAGAGGTCGTAGCTACAGCAGATCACCACCTCCTTATCGCCGTTCAAGGCGTGATGATTCACCATATGGAAATGGAGTGTAAAGGC
TGATATGGTGCAAAAGGGTGATGTTTTTTGATGTGTTCAGCTTCTTCTTCAAACTTAGAGGTCTCTTTCATACTTTTAGTATTTACTCTTAATGACTTTC
TAATGCTTTTGTGATGAGTATAATATCATATGTTTGTGATTGGTTGCTAAACAATTTATTGTATATCTTCTTTTCATTGTGCTGTGAGAGGTTTGGTTAT
CAGCTCAACCTTCGCTCTCTACTCTCTGCATCTTAGACTACTCTTCTCTGCACATCATCATCATCATCATCCTCATCATCATCATGTTGGTGGCTT

dot-bracket secondary structure
..(((.((.((((((((((.(((((((((.(((..((..((((((((((.(((..(((((....((((.((((..((.....((((((.(((((((((((
(((..(((......)))...(((((.((((((......)))...))).))))).(((((.......))))).((((.((...))))))))))))))...(
(((.(((.(((((...))))).))))))).(((.(((.((((..((.(((.((((......))))))).))(((((..(((....)))..))).)).(((
(..(((((((((((((((.(((((....(((..((((.(((.((.((..(((((.((((.(((((..(((((.....((((((...((.....)).....
.))))))..))))).))).))....)).)).))))).))..))..))).))))..)))....))))).)))))...))))))))))...)))))))).))
).)))..)))))))))))).)))))))))).....))))))))....)))))).))))...)))))..))))))))).)))))))))).)).))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q38896|GRP2B_ARATH: 0.00009

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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