ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf661
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGCCAAGGGAGATTTGCCC miRNA* GTAATTACTCCTTGGGCAGTGG mismatches: 3 bulges: 1 |
pre-miRNA
AAATGTATGGATGTATTACCGGGTAATTACTCCTTGGGCAGTGGATCGGTCATCGTTTCTACTGCCAAGGGAGATTTGCCCTGCAATTCATCGTCTACAA
dot-bracket secondary structure
...((((..((((.(((...((((((...((((((.(((((((((.(((...)))..))))))))).))))))..))))))...))).))))...)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATGTATGGATGTATTACCGGGTAATTACTCCTTGGGCAGTGGATCGGTCATCGTTTCTACTGCCAAGGGAGATTTGCCCTGCAATTCATCGTCTACAA
dot-bracket secondary structure
...((((..((((.(((...((((((...((((((.(((((((((.(((...)))..))))))))).))))))..))))))...))).))))...)))).
SIMILARITIES| miRBase aly-MIR399i: 0.0000003 PMRD ptc-miR399a: 0.000005 microPC miR399: 6e-30 | UniProt no hits RFAM mir-399: 0.00002 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST045580) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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