miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001337
species: Lactuca sativa
miRNA family: MIRf661
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTGCCAAGGGAGATTTGCCC

miRNA*
 GTAATTACTCCTTGGGCAGTGG

mismatches: 3
bulges: 1
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pre-miRNA
 AAATGTATGGATGTATTACCGGGTAATTACTCCTTGGGCAGTGGATCGGTCATCGTTTCTACTGCCAAGGGAGATTTGCCCTGCAATTCATCGTCTACAA


dot-bracket secondary structure
...((((..((((.(((...((((((...((((((.(((((((((.(((...)))..))))))))).))))))..))))))...))).))))...)))).



SIMILARITIES
miRBase aly-MIR399i: 0.0000003

PMRD ptc-miR399a: 0.000005

microPC miR399: 6e-30		UniProt no hits

RFAM mir-399: 0.00002		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST045580)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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