ABOUT THIS RECORDspecies: Lactuca serriola
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATGTTCATCATCATCGTCT miRNA* TGATGATGATGATGATGATGATG mismatches: 2 bulges: 2 |
pre-miRNA
ACAACTTCCATTTCTCAATTTCAACTTATTCTACTTCTACATCATGTTCATCATCATCGTCTTCCTTTAGTTTCTTTAGCTTTAGACCCTTCAATAAGCG
GTTTCATTTCATTAACCCACCTCGTTCTTCCCTCAAACAAACCAAAAAACAGCAACGAACCCTTCAAACTAATGCCCCACCACCACAAAGCAGCATCAGA
AGACTCTTGAACTTGAACGATAATCCTAAAGACGATGGTGGTGGCGGAAATGATGATGATGATGATGATGATGATGATCAGAACGAGACTGCGATTAAGG
GGACAATTTTA
dot-bracket secondary structure
......(((....((.((((.((.(((.((((...((..((((((..((((((((((((((((((...((((.....))))..((((((((....))).)
))))((((.............(((((((......................)).)))))............))))..(((((((((.....(((..((((.
......))))..)))....................))))))))).))))..))))))))))))))..))))))..))..)))).)))..)).)))).)).
)))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACAACTTCCATTTCTCAATTTCAACTTATTCTACTTCTACATCATGTTCATCATCATCGTCTTCCTTTAGTTTCTTTAGCTTTAGACCCTTCAATAAGCG
GTTTCATTTCATTAACCCACCTCGTTCTTCCCTCAAACAAACCAAAAAACAGCAACGAACCCTTCAAACTAATGCCCCACCACCACAAAGCAGCATCAGA
AGACTCTTGAACTTGAACGATAATCCTAAAGACGATGGTGGTGGCGGAAATGATGATGATGATGATGATGATGATGATCAGAACGAGACTGCGATTAAGG
GGACAATTTTA
dot-bracket secondary structure
......(((....((.((((.((.(((.((((...((..((((((..((((((((((((((((((...((((.....))))..((((((((....))).)
))))((((.............(((((((......................)).)))))............))))..(((((((((.....(((..((((.
......))))..)))....................))))))))).))))..))))))))))))))..))))))..))..)))).)))..)).)))).)).
)))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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