miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001350
species: Lactuca virosa
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TGTTGGAATGGCTCAATCAAA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAAT
ATCATGAACTACTGTTAATTTGT

dot-bracket secondary structure
.......(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).)))))
)))))..))))))))).......


SIMILARITIES
miRBase tcc-MIR171f: 0.0000000001

PMRD vvi-miR171i: 0.0000000004

microPC miR171: 4e-44		UniProt no hits

RFAM MIR171_1: 0.000000007		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045103)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;