ABOUT THIS RECORDspecies: Lactuca virosa
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAATGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
TGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAAT
ATCATGAACTACTGTTAATTTGT
dot-bracket secondary structure
.......(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).)))))
)))))..))))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAAT
ATCATGAACTACTGTTAATTTGT
dot-bracket secondary structure
.......(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).)))))
)))))..))))))))).......
SIMILARITIES| miRBase tcc-MIR171f: 0.0000000001 PMRD vvi-miR171i: 0.0000000004 microPC miR171: 4e-44 | UniProt no hits RFAM MIR171_1: 0.000000007 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045103) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
