miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001354
species: Lactuca virosa
miRNA family: MIR477
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCTCCCTCAAGGGCTTCTAA

miRNA*
 AGAAGCTTCTTGATGGAGAATA

mismatches: 2
bulges: 1
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pre-miRNA
 TTTAAAAGGCAATGATTGTTTGTTCTCCCTCAAGGGCTTCTAATGTTGGTTGTATGATGCCCTTAATTTCAAGTGTATGTCTAGGATCATATAAGAAGCT
TCTTGATGGAGAATAAAATTTCATTGTCTTTATT

dot-bracket secondary structure
....(((((((((((...((((((((((.((((((((((((.((((.((((.((..((((.(((......))).))))...)).)))))))).)))))).
)))))).))))))))))...)))))))))))...


SIMILARITIES
miRBase aqc-MIR477g: 0.00003

PMRD aqc-miR477g: 0.00003

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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