ABOUT THIS RECORDspecies: Lactuca virosa
miRNA family: MIR477
source: miRNEST
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTCCCTCAAGGGCTTCTAA miRNA* AGAAGCTTCTTGATGGAGAATA mismatches: 2 bulges: 1 |
pre-miRNA
TTTAAAAGGCAATGATTGTTTGTTCTCCCTCAAGGGCTTCTAATGTTGGTTGTATGATGCCCTTAATTTCAAGTGTATGTCTAGGATCATATAAGAAGCT
TCTTGATGGAGAATAAAATTTCATTGTCTTTATT
dot-bracket secondary structure
....(((((((((((...((((((((((.((((((((((((.((((.((((.((..((((.(((......))).))))...)).)))))))).)))))).
)))))).))))))))))...)))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTAAAAGGCAATGATTGTTTGTTCTCCCTCAAGGGCTTCTAATGTTGGTTGTATGATGCCCTTAATTTCAAGTGTATGTCTAGGATCATATAAGAAGCT
TCTTGATGGAGAATAAAATTTCATTGTCTTTATT
dot-bracket secondary structure
....(((((((((((...((((((((((.((((((((((((.((((.((((.((..((((.(((......))).))))...)).)))))))).)))))).
)))))).))))))))))...)))))))))))...
SIMILARITIES| miRBase aqc-MIR477g: 0.00003 PMRD aqc-miR477g: 0.00003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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