miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST001357
species: Leymus cinereus x Leymus triticoides
miRNA family: MIR1132
source: miRNEST

Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATTATGGAACGGAGGGAGTA

miRNA*
 CTTCCTCCGTCCCATTGTA

mismatches: 1
bulges: 2
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pre-miRNA
 CTTAATGGGCATGTAATATGTACTTCCTCCGTCCCATTGTAATAACGTCATAATATTATATTATGGAACGGAGGGAGTAATATTATATATGTACCTAA

dot-bracket secondary structure
.....((((.(((((((((.((((((((((((.(((((((((((.........)))))))..)))).))))))))))))))))))))).....)))).


SIMILARITIES
miRBase osa-MIR819i: 0.00007

PMRD osa-miRf11372-akr: 0.00007

microPC miR1436: 0.000005		UniProt no hits

RFAM MIR806: 0.00002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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