ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATCTAGA miRNA* TAGATATAAATGTATTTAGA mismatches: 2 bulges: 0 |
pre-miRNA
TTTTGAGCAAATCAGTACTACCTCCGACCCATATTAGTTGACCCCCATTTGTCTAGATATAAATGTATTTAGACATGTTTTAGTGTTAGATACATCCGTA
TCTAGATAAATGAGGGCCAATTAATTTGGGTCGGAGGAAGTAGCCTGTTTTGGATT
dot-bracket secondary structure
.......((((.(((((((.(((((((((((.((((((((.(((.(((((((((((((((..(((((((((.((((......)))))))))))))..)))
)))))))))))).))).)))))))).))))))))))).))))..))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTGAGCAAATCAGTACTACCTCCGACCCATATTAGTTGACCCCCATTTGTCTAGATATAAATGTATTTAGACATGTTTTAGTGTTAGATACATCCGTA
TCTAGATAAATGAGGGCCAATTAATTTGGGTCGGAGGAAGTAGCCTGTTTTGGATT
dot-bracket secondary structure
.......((((.(((((((.(((((((((((.((((((((.(((.(((((((((((((((..(((((((((.((((......)))))))))))))..)))
)))))))))))).))).)))))))).))))))))))).))))..))).))))....
SIMILARITIES| miRBase tae-MIR1122: 0.000000002 PMRD tae-miR1122: 0.000000002 microPC miR1122: 0.000000002 | UniProt no hits RFAM MIR1122: 0.0000000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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