ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCCAAAAAG miRNA* TTTCCGGATGGAGGGAGTAGT mismatches: 3 bulges: 0 |
pre-miRNA
ATCAATCCGTCGGTTGTTAAGTACTCCCTCCGTCCCAAAAAGCTTGTCGCTCAAATGGATAAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACA
TCCATTTCTCTGACAAGTATTTCCGGATGGAGGGAGTAGTTTTTCTTGCGTGCGTGTG
dot-bracket secondary structure
.......(((.((.....((.((((((((((((((..(((.(((((((........(((...(((((((((((((((((...........))))))))))
))))))).)))))))))).)))..)))))))))))))).))...)).)))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCAATCCGTCGGTTGTTAAGTACTCCCTCCGTCCCAAAAAGCTTGTCGCTCAAATGGATAAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACA
TCCATTTCTCTGACAAGTATTTCCGGATGGAGGGAGTAGTTTTTCTTGCGTGCGTGTG
dot-bracket secondary structure
.......(((.((.....((.((((((((((((((..(((.(((((((........(((...(((((((((((((((((...........))))))))))
))))))).)))))))))).)))..)))))))))))))).))...)).)))........
SIMILARITIES| miRBase tae-MIR1135: 2e-22 PMRD ata-miR1122: 2e-31 microPC miR1128: 2e-21 | UniProt no hits RFAM MIR1122: 2e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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