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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST001391
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTCCGTCCCAAAATAAGTGC

miRNA*
 ATTTATTTTGGAACGGAGGAA

mismatches: 2
bulges: 0
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pre-miRNA
 GCTGTACTACTCCTACTGTTCGCTCCGTCCCAAAATAAGTGCAGCCATAGTTTTCCGTGTCTAATTTTGACCATTCGTCTTATTTAATTTTTTTTTTAAA
AAAATAAAAACATAAGTCACGAGTAAAGTACTATTCATGTTTTATCATCTTATATCAAGAAAAATGCTAATTATAAAAAATTTCAAATAAGACAGACGAT
CAAAGTTGGGCGCGGAAACTTATGGCTGCATTTATTTTGGAACGGAGGAAGTATTTGTTTACTCGCAT

dot-bracket secondary structure
((.(((..((...((((..((.((((((.(((((((((((((((((((((.(((((((((((((((((((...((.((((((((((((((((((((((..
....)))))..(((((.((.(((((......))))).)).)))))..((((.....))))..(((....)))..))))))))..))))))))).))...)
)))))))))))))))))).))))))))))))))))))))).))))))))))))...)).)))..))..


SIMILARITIES
miRBase osa-MIR812k: 4e-43

PMRD osa-miR812j: 1e-24

microPC miR812: 0.000000000000004		UniProt no hits

RFAM MIR806: 1e-55		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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