ABOUT THIS RECORDspecies: Linum usitatissimum
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
TGGTTGTGAAGAGGGAGGGAACACACGGAGTTTGGAGGCAGCGGTTCATCGATCTCTTCATGGTTTATGTGGGTTCATCCGATCACAAAAACACGTGAATC
GATCGATAAACCTCTGCATCCAGCAACCCCCCTAGTTTCTCCCTTCCTACCT
dot-bracket secondary structure
)(((...((..(((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..((....))))))).)))).))))))..
))))))).)))).)))).))))..)))))......)))))))))))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGTTGTGAAGAGGGAGGGAACACACGGAGTTTGGAGGCAGCGGTTCATCGATCTCTTCATGGTTTATGTGGGTTCATCCGATCACAAAAACACGTGAATC
GATCGATAAACCTCTGCATCCAGCAACCCCCCTAGTTTCTCCCTTCCTACCT
dot-bracket secondary structure
)(((...((..(((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..((....))))))).)))).))))))..
))))))).)))).)))).))))..)))))......)))))))))))..))).
SIMILARITIES| miRBase csi-MIR162: 5.0E-10 PMRD rco-miR162: 5.0E-10 microPC miR162: 3.0E-11 | UniProt no hits RFAM 2MIR162_2: 9.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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