miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lotus japonicus



ABOUT THIS RECORD

ID: MNEST001433
species: Lotus japonicus
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTATGAGGAGCCAAGCATA

mismatches: 2
bulges: 0
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pre-miRNA
 ATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGGAGAGCTCATCGAAACATCAATGATCTCTTTGGATGGCGTATGAGGAGCCAAGCATATTCCAT

dot-bracket secondary structure
..(((.((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).))))))..)))


SIMILARITIES
miRBase gma-MIR160: 7e-36

PMRD gma-miR160a: 7e-36

microPC miR160: 4e-28		UniProt no hits

RFAM mir-160: 2e-42		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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