ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
ACTCTCTCGCTTCGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGCTGCTGCTTCTGCCGTTTTCGCGCGTAATCACTCACCGGAGGAGCGGTTAC
CGCCGCCGGTTGGATCGGATCCCGCCTTGCATCAACTGAATCGGAACCCGCCTTGAAGCTTTG
dot-bracket secondary structure
........(((((((((..(((.(((((.((((((((((.(((((.(((......((...((((.....(((.((((((.(((.......))).))))))
)))...)))).))..))).))))).)))))))))).))))).)))..))))...)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACTCTCTCGCTTCGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGCTGCTGCTTCTGCCGTTTTCGCGCGTAATCACTCACCGGAGGAGCGGTTAC
CGCCGCCGGTTGGATCGGATCCCGCCTTGCATCAACTGAATCGGAACCCGCCTTGAAGCTTTG
dot-bracket secondary structure
........(((((((((..(((.(((((.((((((((((.(((((.(((......((...((((.....(((.((((((.(((.......))).))))))
)))...)))).))..))).))))).)))))))))).))))).)))..))))...)))))....
SIMILARITIES| miRBase gma-MIR168: 0.0000000000001 PMRD gma-miR168: 0.0000000000001 microPC miR168: 0.000002 | UniProt no hits RFAM MIR168: 0.00000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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