miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001436
species: Lotus japonicus
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0
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pre-miRNA
 ACTCTCTCGCTTCGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGCTGCTGCTTCTGCCGTTTTCGCGCGTAATCACTCACCGGAGGAGCGGTTAC
CGCCGCCGGTTGGATCGGATCCCGCCTTGCATCAACTGAATCGGAACCCGCCTTGAAGCTTTG

dot-bracket secondary structure
........(((((((((..(((.(((((.((((((((((.(((((.(((......((...((((.....(((.((((((.(((.......))).))))))
)))...)))).))..))).))))).)))))))))).))))).)))..))))...)))))....


SIMILARITIES
miRBase gma-MIR168: 0.0000000000001

PMRD gma-miR168: 0.0000000000001

microPC miR168: 0.000002		UniProt no hits

RFAM MIR168: 0.00000000000004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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