ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIRf160
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCAGCAGCAGCAGCTGCAC miRNA* GCTGTTGTTGCTACTGCTGCT mismatches: 5 bulges: 0 |
pre-miRNA
GAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCAGCAGCAGCTGCACCACCACAAT
dot-bracket secondary structure
............((.(((((((((.((((.(((((.....))))).)))).))))))))).))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCAGCAGCAGCTGCACCACCACAAT
dot-bracket secondary structure
............((.(((((((((.((((.(((((.....))))).)))).))))))))).))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
