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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001445
species: Lotus japonicus
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGACGCAGCGGTTCATCGAT

miRNA*
 CGATAAACCTCTGCATCCAGC

mismatches: 3
bulges: 0
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pre-miRNA
 TATTTTAATTTAAGAGAGGCGACAAAGTCGCTGGACGCAGCGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAAGAACACAAAACAAGAATCGGTCGA
TAAACCTCTGCATCCAGCGCTCATCTCGCCTCTCTCTCTCTCTTTT

dot-bracket secondary structure
............((((((((((...((.(((((((.((((.((((.(((((((..(((.((..((((...((......)).)))).)).)))..))))))
).)))).)))).)))))))))....))))))))))...........


SIMILARITIES
miRBase cpa-MIR162a: 3e-20

PMRD cpa-miR162a: 3e-20

microPC miR162: 3e-39		UniProt no hits

RFAM MIR162_2: 2e-16		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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