ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: miR4249
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATTTGAGAAGTTGATGTG miRNA* ATTAATTTTCTGTCTCCGT mismatches: 4 bulges: 1 |
pre-miRNA
CCTCCACTGCTTCTGTGTCTTCATTAATTTTCTGTCTCCGTCCCAGCAAGGGGTGGGTCCCATCCATTTTGGCTTATAGATCATGGGTTTTGATTGGTTG
AATAAGCATGTATCAGCATGATCTAGAGTAGTGAAGTGATGGTATGAATCTCACATGGAATTTGAGAAGTTGATGTGAGAAGGAAGTCTGGAAATG
dot-bracket secondary structure
..((((..((((((...((((((((((((((.((..((((.(((.....)))(((((..(((((..(((..((((.(((((((((....(((((..(((.
....)))....))))))))))))))))))...)))..))))).......))))).))))...)).)))))))))).)))).)))))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTCCACTGCTTCTGTGTCTTCATTAATTTTCTGTCTCCGTCCCAGCAAGGGGTGGGTCCCATCCATTTTGGCTTATAGATCATGGGTTTTGATTGGTTG
AATAAGCATGTATCAGCATGATCTAGAGTAGTGAAGTGATGGTATGAATCTCACATGGAATTTGAGAAGTTGATGTGAGAAGGAAGTCTGGAAATG
dot-bracket secondary structure
..((((..((((((...((((((((((((((.((..((((.(((.....)))(((((..(((((..(((..((((.(((((((((....(((((..(((.
....)))....))))))))))))))))))...)))..))))).......))))).))))...)).)))))))))).)))).)))))).))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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