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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST001513
species: Manihot esculenta
miRNA family: MIR394
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGTGGGCATACTGCCAACTG

miRNA*
 TTGGCATTCTGTCCACCTCC

mismatches: 3
bulges: 1
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pre-miRNA
 AGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA

dot-bracket secondary structure
.((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).


SIMILARITIES
miRBase ptc-MIR394b: 1e-38

PMRD ptc-miRf10096-akr: 1e-29

microPC miR394: 2e-37		UniProt no hits

RFAM MIR394: 7e-16		most similar mature miRNAs

Identical with: miR394 from microPC (MNEST046238)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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