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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001515
species: Manihot esculenta
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGGCAGCGGTTCATCGAT

miRNA*
 CGATAAACCTCTGCATCCAGC

mismatches: 3
bulges: 0
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pre-miRNA
 GTTGCTGTTTTAGGTTGGGGGTTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCG
ATCGATAAACCTCTGCATCCAGCGCTCACCCTCTCCCTTTTTTCTCTCTGT

dot-bracket secondary structure
...........(((..((((((...(((..(((((.((((.((((.((((((((((....))))(((((..(((((.......)))))......))))).
)))))).)))).)))).))))).))).))))))..))).............


SIMILARITIES
miRBase ghr-MIR162a: 3e-33

PMRD ghr-miR162a: 3e-33

microPC miR162: 5e-47		UniProt no hits

RFAM MIR162_2: 1e-26		most similar mature miRNAs

Identical with: miR162 from microPC (MNEST046504)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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