ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
GTTGCTGTTTTAGGTTGGGGGTTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCG
ATCGATAAACCTCTGCATCCAGCGCTCACCCTCTCCCTTTTTTCTCTCTGT
dot-bracket secondary structure
...........(((..((((((...(((..(((((.((((.((((.((((((((((....))))(((((..(((((.......)))))......))))).
)))))).)))).)))).))))).))).))))))..))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTGCTGTTTTAGGTTGGGGGTTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCG
ATCGATAAACCTCTGCATCCAGCGCTCACCCTCTCCCTTTTTTCTCTCTGT
dot-bracket secondary structure
...........(((..((((((...(((..(((((.((((.((((.((((((((((....))))(((((..(((((.......)))))......))))).
)))))).)))).)))).))))).))).))))))..))).............
SIMILARITIES| miRBase ghr-MIR162a: 3e-33 PMRD ghr-miR162a: 3e-33 microPC miR162: 5e-47 | UniProt no hits RFAM MIR162_2: 1e-26 | most similar mature miRNAs |
Identical with: miR162 from microPC (MNEST046504) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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