ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: miR166m
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGGCTGGCTCTAGG miRNA* TTGGACCAGGCTTCATTCCCC mismatches: 3 bulges: 2 |
pre-miRNA
CATTAATGGTTGTTTTTGAAGGGAATGTTGGCTGGCTCTAGGCATTCACAAGTGTGGGAGAAGAAATCGATCAGAAGCAGTGGAAGCTTTGGACCAGGCT
TCATTCCCCTCAATATAATTACCATCT
dot-bracket secondary structure
.....(((((.(((.((((.(((((((..((((((.((.((((.(((((..((.(((..((.....))..)))...)).))))).)))).)).))).)))
.))))))).))))...))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATTAATGGTTGTTTTTGAAGGGAATGTTGGCTGGCTCTAGGCATTCACAAGTGTGGGAGAAGAAATCGATCAGAAGCAGTGGAAGCTTTGGACCAGGCT
TCATTCCCCTCAATATAATTACCATCT
dot-bracket secondary structure
.....(((((.(((.((((.(((((((..((((((.((.((((.(((((..((.(((..((.....))..)))...)).))))).)))).)).))).)))
.))))))).))))...))).)))))..
SIMILARITIES| miRBase vvi-MIR166b: 0.0000000004 PMRD vvi-miR166b: 0.0000000004 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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