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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST001524
species: Manihot esculenta
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCG

miRNA*
 GGAATGTTGTTTGGCTCGAGG

mismatches: 3
bulges: 0
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pre-miRNA
 ATGCTGAGAGGTTAAGGTTGATGGGAATGTTGTTTGGCTCGAGGTGACATAGGTTTGATCTTTTATCTTTGAAAATTTCTGTTTCTTGGTTTCTTTTTTC
TGGAGAAAATTCAAAGATACATAGCCCTATGTAATCTCGGACCAGGCTTCATTCCCGTCAACCAACCCTTTCTTGAT

dot-bracket secondary structure
.....((((((....((((((((((((((..((((((.(((((((.(((((((.(((......((((((((((..(((((....................
.)))))...))))))))))..))).))))))).))))))).))))))..))))))))))))))...)))))).....


SIMILARITIES
miRBase tcc-MIR166b: 0.00000000000004

PMRD ptc-miR166d: 0.0000006

microPC miR166: 0.000002		UniProt no hits

RFAM mir-166: 0.00000004		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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