ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCC miRNA* CGACTCTCCCTTGGCAAA mismatches: 2 bulges: 1 |
pre-miRNA
GTGCATGGTCGAGGAATGGCAGGCGACTCTCCCTTGGCAAACGGATGATGATCACTATTCACCATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGA
ATTGCCCTGCCATTTCTAATATCATAC
dot-bracket secondary structure
....(((((..(((((((((((((((.(((((.(((((((((((((..(((.......)))..(((((......))))).))))).)))))))).)))))
.))).))))))))))))...)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGCATGGTCGAGGAATGGCAGGCGACTCTCCCTTGGCAAACGGATGATGATCACTATTCACCATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGA
ATTGCCCTGCCATTTCTAATATCATAC
dot-bracket secondary structure
....(((((..(((((((((((((((.(((((.(((((((((((((..(((.......)))..(((((......))))).))))).)))))))).)))))
.))).))))))))))))...)))))..
SIMILARITIES| miRBase vvi-MIR399h: 0.000000002 PMRD vvi-miR399h: 0.000000002 microPC miR399: 7e-46 | UniProt no hits RFAM mir-399: 0.00000003 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST045711) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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