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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001526
species: Manihot esculenta
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAATTGCCC

miRNA*
 GCGATTCTCCTTTGGCAGG

mismatches: 1
bulges: 0
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pre-miRNA
 ATACTCCTAGAGGGTAGTGAAGAATATCAGTGCGATTCTCCTTTGGCAGGAATTTGGTATTCTGCTGTTAACCAGTCTGCTAAACTGATAGCTGCCAAAGG
AGAATTGCCCTGTTATTCAACTACACTACTAATTACACAA

dot-bracket secondary structure
)......(((.(((((((...(((((.(((.((((((((((((((((((...(((((((....((((.....)))).))))))).......))))))))))
)))))))).))).))))).))))).)).))).........


SIMILARITIES
miRBase vvi-MIR399a: 5.0E-10

PMRD vvi-miR399a: 5.0E-10

microPC miR399: 2.0E-43		UniProt no hits

RFAM 9mir-399: 5.0E-10		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046746)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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