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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001528
species: Manihot esculenta
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATCTTGCAGCTTCAAT

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TCTCGTTTAATATTAATGTTGGTTTGAGAGGTTGAAGCTGCCAGCATGATCTGGTAATGATCTAGCCAAAACCTTTCTATACGTAGACCTATATTTATATT
TCTATACACATCAAGATATGGATTATTAAATTTCCAGTTTTCTTTACAAAGTTTTCTGCTATATTCCTTTCAATTAGGCTATCAATTTTTACCAAGGGAA
AGGATTTACGAGTACTGAAAAGTACCCATATATCCTTGTAGCCTAAAAAGAGGAATAGTTCCTGATTGTTCGATCAGGGGTTTTGAGACAAAAGATAAGA
AACCTAGTTGGATAGGATATATGAGTGCTGTGTCTCTGTGTGTGTGTGTGTGTGTGGGGTTCCATCATCAGGTCATCTTGCAGCTTCAATCACTCAATCA
CCAACAATGAAAGAAAAT

dot-bracket secondary structure
)...........(((.((((((((((((.((((((((((((.((.((((((((((.(((.((((...................))))(((((((.(((((.
..((((((((...((((((((....(((.((.(((.....(((..((..((.(((((.((.(((((((((...((((((((((..(((.....))).))(
(((((.((...(((((....)))))...)).)))))).))))))))..))))))))).(((((((((....))))))))).((((...))))))...)))
)).)).)).)))..))).)).)))...)))))))).)))))))).))))).)))))))....))).)))))))))))).)))))))))))).)))))..)
)))))).)))........


SIMILARITIES
miRBase vvi-MIR167a: 4.0E-13

PMRD ppl-miR167b: 2.0E-14

microPC miR167: 2.0E-5		UniProt no hits

RFAM 1MIR167_1: 7.0E-15		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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