ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGAACAGGCAGAGCATGG miRNA* ATGCACTGCCTCTTCCCTGGC mismatches: 4 bulges: 0 |
pre-miRNA
GGGTAAAGAAAGAGACGGACAAAGACTGGGAACAGGCAGAGCATGGGTGGAACTATTAACACAAGTATCTGTTTTAGCACCACCCATGCACTGCCTCTTC
CCTGGCTTGCGGGTCTTCTTTTTCTGCT
dot-bracket secondary structure
.(((..(((((((((.((((.(((...(((((.((((((.((((((((((..(((..((((........)))).)))..)))))))))).)))))).)))
))...)))....))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGTAAAGAAAGAGACGGACAAAGACTGGGAACAGGCAGAGCATGGGTGGAACTATTAACACAAGTATCTGTTTTAGCACCACCCATGCACTGCCTCTTC
CCTGGCTTGCGGGTCTTCTTTTTCTGCT
dot-bracket secondary structure
.(((..(((((((((.((((.(((...(((((.((((((.((((((((((..(((..((((........)))).)))..)))))))))).)))))).)))
))...)))....))))))))))))))))
SIMILARITIES| miRBase ptc-MIR408: 7e-21 PMRD ptc-miR408: 7e-21 microPC miR408: 5e-19 | UniProt no hits RFAM MIR408: 6e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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