ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* CGTCACCATCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
CGAAAAACCATTGATCAGTCAGTATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGG
TGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATATCTGACTACAATATGGGGAC
dot-bracket secondary structure
)......((((.....((((((((((.((.((((((.((.(((((((((((.((.......(((((..((((((...((((.........))))....)))
))).))))).(((..((((((...))))))..))))).))))))))))).)).)))))).)).)))).)))))).....))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGAAAAACCATTGATCAGTCAGTATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGG
TGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATATCTGACTACAATATGGGGAC
dot-bracket secondary structure
)......((((.....((((((((((.((.((((((.((.(((((((((((.((.......(((((..((((((...((((.........))))....)))
))).))))).(((..((((((...))))))..))))).))))))))))).)).)))))).)).)))).)))))).....))))....
SIMILARITIES| miRBase bdi-MIR172a: 6.0E-10 PMRD mes-miR172: 4.0E-79 microPC miR172: 2.0E-68 | UniProt no hits RFAM 2mir-172: 3.0E-9 | most similar mature miRNAs |
Identical with: mes-miR172 from PMRD (MNEST048693), miR172 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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