ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* CGTCACCATCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
GAAAAACCATTGATCAGTCAGTATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGG
TGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATATCTGACTACAATATGGGGAC
dot-bracket secondary structure
......((((.....((((((((((.((.((((((.((.(((((((((((.((.......(((((..((((((...((((.........))))....)))
))).))))).(((..((((((...))))))..))))).))))))))))).)).)))))).)).)))).)))))).....))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAAAACCATTGATCAGTCAGTATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGG
TGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATATCTGACTACAATATGGGGAC
dot-bracket secondary structure
......((((.....((((((((((.((.((((((.((.(((((((((((.((.......(((((..((((((...((((.........))))....)))
))).))))).(((..((((((...))))))..))))).))))))))))).)).)))))).)).)))).)))))).....))))....
SIMILARITIES| miRBase bdi-MIR172a: 0.0000000006 PMRD mes-miR172: 4e-79 microPC miR172: 2e-68 | UniProt no hits RFAM mir-172: 0.000000003 | most similar mature miRNAs |
Identical with: mes-miR172 from PMRD (MNEST048693) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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