ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCCTCA miRNA* AGACATATGAGATGATGAAC mismatches: 4 bulges: 1 |
pre-miRNA
TCGTCGTCTTCATCATCATCATCATCCTCATCATCACCTTCTAATAGCTATGTTGCCACTGTTGGTTCAACGGCTTCAACTTCTACACCGAGATGCTATC
ATCAAATCTCGAAGCCGGTAGCCTATCCTGTGAAGAAGATTCTTCCTCATCCTCACTATGTTTACCATGTCCCTGGAAACACTAGCCATGCCTNNNTGGT
TCACAACGGAAATCATTGGCAATAGCTGCTGCGGAACTGAACTGAGACATATGAGATGATGAACCATAAA
dot-bracket secondary structure
........(((((((((.((((....((((...(((..((((..((((..((((((((.((..((((...(((((((............(((((......
.....))))))))))))..))))..((((((((.((.(((........))).)).((((((((.(((......)))))))).)))....(((.....)))
)))))..)))...)).))))))))...)))).)))).)))..))))....))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TCGTCGTCTTCATCATCATCATCATCCTCATCATCACCTTCTAATAGCTATGTTGCCACTGTTGGTTCAACGGCTTCAACTTCTACACCGAGATGCTATC
ATCAAATCTCGAAGCCGGTAGCCTATCCTGTGAAGAAGATTCTTCCTCATCCTCACTATGTTTACCATGTCCCTGGAAACACTAGCCATGCCTNNNTGGT
TCACAACGGAAATCATTGGCAATAGCTGCTGCGGAACTGAACTGAGACATATGAGATGATGAACCATAAA
dot-bracket secondary structure
........(((((((((.((((....((((...(((..((((..((((..((((((((.((..((((...(((((((............(((((......
.....))))))))))))..))))..((((((((.((.(((........))).)).((((((((.(((......)))))))).)))....(((.....)))
)))))..)))...)).))))))))...)))).)))).)))..))))....))))))))))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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