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Species belonging to selected taxon:

Mesembryanthemum crystallinum



ABOUT THIS RECORD

ID: MNEST001548
species: Mesembryanthemum crystallinum
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCGGTTCAATAAAGCTGTGG

miRNA*
 CAGCTTTCTTGAACTGCATC

mismatches: 1
bulges: 1
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pre-miRNA
 AATCAATACATATGGTCCTCTTTGTATTCTTCCTCAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATTT
TTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATAA
AGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCA

dot-bracket secondary structure
)...........(((.(((.(((((((.(((((((((((((.((((((((((....(((.((.((((((((((((((...(((((.....(((((((.(((
(((.((((((((((.......)))))))))).)))))).....)))))))..))))).)))))))))))))).))........))).)))))))))).))
))))).))))))))))))).))).)))...........


SIMILARITIES
miRBase lja-MIR396: 8.0E-13

PMRD lja-miR396: 8.0E-13

microPC miR396: 4.0E-33		UniProt no hits

RFAM 6MIR396: 6.0E-11		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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