miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Beta vulgaris, Mesembryanthemum crystallinum, Tamarix hispida



ABOUT THIS RECORD

ID: MNEST001555
species: Mesembryanthemum crystallinum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACATCATCATCATCATCATCA

miRNA*
 ATGATGGATGGGCTTGTGG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 AAACCATCGCCACATCATCATCATCATCATCATACAGACCCTCCTCCCCTCGAAAAGACAACTTTACCCCTCTCTATTCCAATTATTCCCAAAAGCCCTC
ACCCCTTCTGGGCCCCAACTTCCGGGCCCCACCTTCCTCCGTCCACCGGAGAGCCGCTAGTGGCTATGCGGCGGCGCTTCTGGATATAGCGCAGTCAAAC
GGCGTGGTATTGGAGGTGGGAAGAGACGTGAGGCGGCTGCTGAGGTTGCTGAGGAATAATGGGCAGGTTAAGGAGTTGATGATGGATGGGCTTGTGGAGG
AGAGA

dot-bracket secondary structure
......((.(((((...(((((..((((((((.....((((((((.(((..(((.(((..............))).)))..((((((((....(((((((
((...((((((((((........))))))..(((.((((((.((.((((((.((((((.(((....)))))))))..)))))).....((((.((...))
.))))))...)))))).))).))))..)))))).((((.....)))))))..))))))))))).)))...))).)))))))))))))))...)))))...
.))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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