ABOUT THIS RECORDspecies: Mimulus guttatus
miRNA family: MIR1533
source: miRNEST
Taxonomy by NCBI:
Mimulus guttatus Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAATAAAAATAATAATAATA miRNA* TAATTATTTTTTTATACTGA mismatches: 4 bulges: 1 |
pre-miRNA
GGGATATAATAAAAATAATAATAATAAATACTGCTCCGGGTTTCACCTCTGACGAGGAATTCCTGTATTTTGAGAAGTTCAACTGTATACGCCACCTGTT
TTCTCCGATCGAAAATTCATCTCCGATTTCCCCCACCGCCGCCGTTAATCGCGATGAACTGCGAAGTCTGCCAACTCAAAGAACTCGTGAGTTTCCTTTT
TTTCTCTTCAACGTTGAATTTATGAGAGGCTGTATCTATAATTATTTTTTTATACTGAAA
dot-bracket secondary structure
........(((((((.((((((.(((.((((.(((.((((.....((((....))))....))))...((.((((((..((...............)).)
))))).))(((....((((((..(((((..................))))).))))))...)))..(((..........))).(((((((((((......
...............))))))))))).))).)))).))).))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGGATATAATAAAAATAATAATAATAAATACTGCTCCGGGTTTCACCTCTGACGAGGAATTCCTGTATTTTGAGAAGTTCAACTGTATACGCCACCTGTT
TTCTCCGATCGAAAATTCATCTCCGATTTCCCCCACCGCCGCCGTTAATCGCGATGAACTGCGAAGTCTGCCAACTCAAAGAACTCGTGAGTTTCCTTTT
TTTCTCTTCAACGTTGAATTTATGAGAGGCTGTATCTATAATTATTTTTTTATACTGAAA
dot-bracket secondary structure
........(((((((.((((((.(((.((((.(((.((((.....((((....))))....))))...((.((((((..((...............)).)
))))).))(((....((((((..(((((..................))))).))))))...)))..(((..........))).(((((((((((......
...............))))))))))).))).)))).))).))))))))))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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