ABOUT THIS RECORDspecies: Mimulus guttatus
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Mimulus guttatus Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAGATGTCG miRNA* GCATGTTTAGCAAGCTCGCCG mismatches: 2 bulges: 2 |
pre-miRNA
CCCTCAGAAACAGCATGTTTAGCAAGCTCGCCGGGCAAGACCAACCGGACGGCGGTCTGAATCTCCCGGGAAGTGATGGTGGGCTTCTTATTGATCCTTG
CCAATCGGGAAGATTCTCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
...(((..(((.((((.(((((.((((((((((((..(((((..((....)).)))))(((((((((((.......(((((((..((.....))..))))
))).))))).)))))))))))))))))))).))).)))).)))..)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCCTCAGAAACAGCATGTTTAGCAAGCTCGCCGGGCAAGACCAACCGGACGGCGGTCTGAATCTCCCGGGAAGTGATGGTGGGCTTCTTATTGATCCTTG
CCAATCGGGAAGATTCTCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
...(((..(((.((((.(((((.((((((((((((..(((((..((....)).)))))(((((((((((.......(((((((..((.....))..))))
))).))))).)))))))))))))))))))).))).)))).)))..)))..
SIMILARITIES| miRBase no hits PMRD osa-miRf10144-akr: 0.000000000008 microPC no hits | UniProt sp|O65818|H2B2_SOLLC: 6e-19 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
